intermine-R2RML-mapping/templates.toml at master · danielabutano/intermine-R2RML-mapping · GitHub

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title="BioTestMine SPARQL endpoint"

[[tabGroups]]

name="Templates"

[[tabGroups.tabs]]
name="Gene -> Proteins"
query="""
PREFIX up: <http://purl.uniprot.org/core/>
PREFIX im: <http://intermine.org/vocabulary/>

SELECT ?protein ?primaryAccession ?uniprotName ?gene ?genePrimaryIdentifier ?symbol WHERE {
?protein a up:Protein .
?protein im:hasPrimaryAccession ?primaryAccession .
?protein im:hasUniprotName ?uniprotName .
?protein im:hasGene ?gene .
?gene im:hasPrimaryIdentifier ?genePrimaryIdentifier .
?gene im:hasSymbol ?symbol .
FILTER(?symbol="ABRA"^^xsd:string)
}
"""

[[tabGroups.tabs]]
name="Organism -> All proteins"
query="""
PREFIX up: <http://purl.uniprot.org/core/>
PREFIX im: <http://intermine.org/vocabulary/>

SELECT ?protein ?primaryAccession ?uniprotName ?name ?length ?md5checksum ?organismName WHERE {
?protein a up:Protein .
?protein im:hasPrimaryAccession ?primaryAccession .
?protein im:hasUniprotName ?uniprotName .
?protein im:hasName ?name .
?protein im:hasLength ?length .
?protein im:hasMd5checksum ?md5checksum .
?protein im:hasOrganism ?organism .
?organism im:hasName ?organismName .
FILTER(?organismName="Plasmodium falciparum 3D7"^^xsd:string)
}
"""