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data
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: BIDS interfaces
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collate
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: Batch collation functionality
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: Data references
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DataQuery
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functional
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General use
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I/O and filesystem
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Tensor casting and binding
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Data frames
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Neuroimaging datasets
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Missing values
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: HCP interfaces
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<a class="reference internal" href="api/hypercoil.data.hcp.hcp_references.html">
<code class="docutils literal notranslate">
<span class="pre">
hcp_references
</span>
</code>
</a>
</li>
</ul>
</li>
</ul>
</li>
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<a class="reference internal" href="engine.html">
<code class="docutils literal notranslate">
<span class="pre">
engine
</span>
</code>
: Differentiable engine
</a>
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<a class="reference internal" href="api/hypercoil.engine.accumulate.html">
<code class="docutils literal notranslate">
<span class="pre">
accumulate
</span>
</code>
: Local gradient accumulation
</a>
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<a class="reference internal" href="api/hypercoil.engine.accumulate.Accumulator.html">
<code class="docutils literal notranslate">
<span class="pre">
Accumulator
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.engine.accumulate.AccumulatingFunction.html">
<code class="docutils literal notranslate">
<span class="pre">
AccumulatingFunction
</span>
</code>
</a>
</li>
</ul>
</li>
</ul>
</li>
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<a class="reference internal" href="eval.html">
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eval
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</code>
: Benchmarks and evaluation
</a>
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functional
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: Functions and functionals
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<a class="reference internal" href="api/hypercoil.functional.activation.html">
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activation
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: Activation functions
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<a class="reference internal" href="api/hypercoil.functional.activation.amplitude_tanh.html">
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amplitude_tanh
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.activation.amplitude_atanh.html">
<code class="docutils literal notranslate">
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amplitude_atanh
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.activation.corrnorm.html">
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corrnorm
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.activation.isochor.html">
<code class="docutils literal notranslate">
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isochor
</span>
</code>
: PSD normalisation
</a>
</li>
</ul>
</li>
<li class="toctree-l2 has-children">
<a class="reference internal" href="api/hypercoil.functional.cmass.html">
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cmass
</span>
</code>
: Centre of mass
</a>
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cmass_coor
</span>
</code>
: Centre of mass, any coordinates
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.cmass.cmass.html">
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cmass
</span>
</code>
: Centre of mass, array coordinates
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.cmass.diffuse.html">
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diffuse
</span>
</code>
: Diffuseness around centre of mass
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.cmass.cmass_reference.html">
Displacement from a reference centre of mass
</a>
</li>
</ul>
</li>
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<a class="reference internal" href="api/hypercoil.functional.cov.html">
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cov
</span>
</code>
: Covariances and correlations
</a>
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cov
</span>
</code>
: Covariance
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.cov.corr.html">
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corr
</span>
</code>
: Pearson correlation
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.cov.partialcov.html">
<code class="docutils literal notranslate">
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partialcov
</span>
</code>
: Partial covariance
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.cov.partialcorr.html">
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partialcorr
</span>
</code>
: Partial correlation
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.cov.pairedcov.html">
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pairedcov
</span>
</code>
: Paired covariance
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.cov.pairedcorr.html">
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pairedcorr
</span>
</code>
: Paired correlation
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.cov.conditionalcov.html">
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conditionalcov
</span>
</code>
: Conditional covariance
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.cov.conditionalcorr.html">
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conditionalcorr
</span>
</code>
: Conditional correlation
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.cov.precision.html">
<code class="docutils literal notranslate">
<span class="pre">
precision
</span>
</code>
: Inverse covariance (precision)
</a>
</li>
</ul>
</li>
<li class="toctree-l2 has-children">
<a class="reference internal" href="api/hypercoil.functional.connectopy.html">
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connectopy
</span>
</code>
: Connectopic manifolds
</a>
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<code class="docutils literal notranslate">
<span class="pre">
laplacian_eigenmaps
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.connectopy.diffusion_mapping.html">
<code class="docutils literal notranslate">
<span class="pre">
diffusion_mapping
</span>
</code>
</a>
</li>
</ul>
</li>
<li class="toctree-l2 has-children">
<a class="reference internal" href="api/hypercoil.functional.fourier.html">
<code class="docutils literal notranslate">
<span class="pre">
fourier
</span>
</code>
: Frequency-domain filter
</a>
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product_filter
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.fourier.product_filtfilt.html">
<code class="docutils literal notranslate">
<span class="pre">
product_filtfilt
</span>
</code>
: Zero-phase filter
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.fourier.unwrap.html">
<code class="docutils literal notranslate">
<span class="pre">
unwrap
</span>
</code>
: Unwrap phase
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.fourier.analytic_signal.html">
<code class="docutils literal notranslate">
<span class="pre">
analytic_signal
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.fourier.hilbert_transform.html">
<code class="docutils literal notranslate">
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hilbert_transform
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.fourier.envelope.html">
<code class="docutils literal notranslate">
<span class="pre">
envelope
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.fourier.instantaneous_phase.html">
<code class="docutils literal notranslate">
<span class="pre">
instantaneous_phase
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.fourier.instantaneous_frequency.html">
<code class="docutils literal notranslate">
<span class="pre">
instantaneous_frequency
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.fourier.env_inst.html">
<code class="docutils literal notranslate">
<span class="pre">
env_inst
</span>
</code>
</a>
</li>
</ul>
</li>
<li class="toctree-l2 has-children">
<a class="reference internal" href="api/hypercoil.functional.graph.html">
<code class="docutils literal notranslate">
<span class="pre">
graph
</span>
</code>
: Graphs and networks
</a>
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<code class="docutils literal notranslate">
<span class="pre">
girvan_newman_null
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.graph.modularity_matrix.html">
<code class="docutils literal notranslate">
<span class="pre">
modularity_matrix
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.graph.coaffiliation.html">
<code class="docutils literal notranslate">
<span class="pre">
coaffiliation
</span>
</code>
: Community coaffiliation
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.graph.relaxed_modularity.html">
<code class="docutils literal notranslate">
<span class="pre">
relaxed_modularity
</span>
</code>
</a>
</li>
<li class="toctree-l3">
<a class="reference internal" href="api/hypercoil.functional.graph.graph_laplacian.html">
<code class="docutils literal notranslate">
<span class="pre">
graph_laplacian
</span>
</code>
: Graph Laplacian
</a>
</li>
</ul>