Depends on release of nextstrain/augur#1384
Note the new option to use --metadata-columns to export metadata without needing to use as coloring in the "What metadata is exported" section of the "Augur to Auspice" docs.
|
What metadata is exported |
|
------------------------- |
|
|
|
Augur has two main types of “metadata” which we'll refer to as |
|
“TSV-data” (provided with the ``--metadata`` argument) and “node-data” |
|
which are JSONs provided via ``--node-data`` (see :doc:`data formats </reference/data-formats>` for more). |
|
Typically, node-data information is automatically exported as a coloring whereas |
|
TSV-data must be explicitly exported by requesting it as a coloring in the |
|
auspice-config JSON. [#f3]_ Metadata is exported as a coloring if via the |
|
following process: |
|
|
|
- All key-value pairs specified in node-data JSONs, unless they match a |
|
hardcoded-list of exclusions and special-cases (next section). This |
|
has the effect that data provided in node-data JSONs will form a |
|
coloring and thus be exported in the dataset JSON. |
|
- Command-line provided colorings (not covered in this guide) |
|
- Colorings specified in the ``auspice_config.json`` (see below) |
Depends on release of nextstrain/augur#1384
Note the new option to use
--metadata-columnsto export metadata without needing to use as coloring in the "What metadata is exported" section of the "Augur to Auspice" docs.docs.nextstrain.org/src/learn/augur-to-auspice.rst
Lines 423 to 439 in 2db33f1