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BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

31 followers
Vancouver, BC
http://www.bccdc.ca/publichealthlab

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ncov2019-artic-nf ncov2019-artic-nf Public

Forked from connor-lab/ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

Nextflow 4 1
illumina-uploader illumina-uploader Public

Watch for new files in Illumina sequencer and upload to remote server

Python 4 1
mpxv-artic-nf mpxv-artic-nf Public

Nextflow 3 4
covid-qc covid-qc Public

Static site for displaying COVID-19 sequencing quality control data

Clojure 5

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Showing 10 of 135 repositories

PCR_strainer Public Forked from KevinKuchinski/PCR_strainer
A tool for assessing the inclusivity of primer and probe oligonucleotides from PCR assays against numerous reference genome sequences

BCCDC-PHL/PCR_strainer’s past year of commit activity

Python 0 MIT 3 1 0 Updated Mar 31, 2026
riboscope Public
Scoping prokaryotic ribosomal repeat regions for SNVs from short paired-end sequences.

BCCDC-PHL/riboscope’s past year of commit activity

HTML 0 Apache-2.0 0 0 0 Updated Mar 31, 2026
covflo Public
Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.

BCCDC-PHL/covflo’s past year of commit activity

Python 2 GPL-3.0 3 0 0 Updated Mar 25, 2026
wasteflow2 Public
Nextflow pipeline for probe-enriched pathogen surveillance in wastewater

BCCDC-PHL/wasteflow2’s past year of commit activity

Nextflow 0 MIT 0 2 1 Updated Mar 10, 2026
tick-COI-amplicon-illumina-nf Public
Tick cytochrome oxidase subunit I (COI) amplicon sequencing

BCCDC-PHL/tick-COI-amplicon-illumina-nf’s past year of commit activity

Python 0 0 0 0 Updated Mar 5, 2026
routine-assembly Public
Pipeline for performing routine genome assembly

BCCDC-PHL/routine-assembly’s past year of commit activity

Nextflow 2 2 6 0 Updated Mar 3, 2026
illumina-uploader Public
Watch for new files in Illumina sequencer and upload to remote server

BCCDC-PHL/illumina-uploader’s past year of commit activity

Python 4 1 3 0 Updated Feb 26, 2026
nf-shovill Public
a nextflow wrapper for shovill

BCCDC-PHL/nf-shovill’s past year of commit activity

Nextflow 0 0 0 0 Updated Feb 4, 2026
abricate-nf Public
A Nextflow pipeline to run the Abricate tool by Torsten Seemann compliant with BCCDC workflow standards

BCCDC-PHL/abricate-nf’s past year of commit activity

Nextflow 0 0 0 0 Updated Feb 3, 2026
mlst-nf Public
Run mlst on multiple samples with integrated quality control.

BCCDC-PHL/mlst-nf’s past year of commit activity

Nextflow 2 1 3 0 Updated Feb 3, 2026

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