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@CoBrALab

Computational Brain Anatomy Laboratory

Computational Brain Anatomy Laboratory, located in the CIC at the Douglas Institute, McGill University

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  1. atlases atlases Public

    Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space

    Python 34 21

  2. optimized_antsMultivariateTemplateConstruction optimized_antsMultivariateTemplateConstruction Public

    A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support

    Shell 36 11

  3. AllenHumanGeneMNI AllenHumanGeneMNI Public

    Careful multispectral registration of the Allen Human Brain Gene Samples in MNI ICBM NLIN SYM 09c space

    Jupyter Notebook 9

  4. MAGeTBrain-nextflow MAGeTBrain-nextflow Public

    Shell 1 1

  5. RABIES RABIES Public

    fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/

    Python 51 22

  6. libBIDS.sh libBIDS.sh Public

    Shell 21 3

Repositories

Showing 10 of 52 repositories
  • RABIES Public

    fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/

    CoBrALab/RABIES’s past year of commit activity
    Python 51 22 54 8 Updated Mar 20, 2026
  • libBIDS.sh Public
    CoBrALab/libBIDS.sh’s past year of commit activity
    Shell 21 MIT 3 7 1 Updated Mar 20, 2026
  • UKBB-tabular-processing Public

    Scripts to handle the tabular data associated with the UK BioBank

    CoBrALab/UKBB-tabular-processing’s past year of commit activity
    Python 9 1 7 0 Updated Mar 19, 2026
  • PyQC Public

    Python+Qt5 Interface for quickly quality-controlling arbitrary sets of images

    CoBrALab/PyQC’s past year of commit activity
    Python 2 GPL-3.0 1 3 0 Updated Mar 16, 2026
  • antsRegistration_affine_SyN Public
    CoBrALab/antsRegistration_affine_SyN’s past year of commit activity
    Shell 2 0 2 0 Updated Mar 13, 2026
  • CPCA Public

    Complementary principal component analysis (CPCA) for fMRI confound correction.

    CoBrALab/CPCA’s past year of commit activity
    Python 0 0 0 0 Updated Mar 5, 2026
  • qbatch Public
    CoBrALab/qbatch’s past year of commit activity
    Python 33 Unlicense 13 27 2 Updated Mar 5, 2026
  • MAGeTBrain-nextflow Public
    CoBrALab/MAGeTBrain-nextflow’s past year of commit activity
    Shell 1 1 14 0 Updated Mar 4, 2026
  • ODC-Mouse-Forms Public

    A repo containing OpenDataCapture forms for tracking mouse data gathered from experiments within the CoBra Lab

    CoBrALab/ODC-Mouse-Forms’s past year of commit activity
    TypeScript 1 1 11 0 Updated Mar 3, 2026
  • synthstrip_N3 Public

    A preprocessing tool for human T1w MRIs

    CoBrALab/synthstrip_N3’s past year of commit activity
    Shell 2 1 8 2 Updated Feb 13, 2026
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