Skip to content
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions analytics/anvil-catalog-sheets/constants.py
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
# CHANGE THESE VALUES TO GENERATE NEW REPORTS
# The date of the current month to report on (yyyy-mm)
CURRENT_MONTH = "2026-03"
CURRENT_MONTH = "2026-04"
# The name of the folder in which to save the report
PARENT_FOLDER_NAME = "March 2026"
PARENT_FOLDER_NAME = "April 2026"

# The name of the spreadsheet with the report
SHEET_NAME = "AnVIL Catalog"
Expand Down
4 changes: 2 additions & 2 deletions analytics/anvil-explorer-sheets/constants.py
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
# CHANGE THESE VALUES TO GENERATE NEW REPORTS
# The date of the current month to report on (yyyy-mm)
CURRENT_MONTH = "2026-03"
CURRENT_MONTH = "2026-04"
Copy link
Copy Markdown
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Updated all four constants files from 2026-03 to 2026-04 for the April report period.

# The name of the folder in which to save the report
PARENT_FOLDER_NAME = "March 2026"
PARENT_FOLDER_NAME = "April 2026"

# The name of the spreadsheet with the report
SHEET_NAME = "AnVIL Explorer"
Expand Down
4 changes: 2 additions & 2 deletions analytics/hca-explorer-sheets/constants.py
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
# CHANGE THESE VALUES TO GENERATE NEW REPORTS
# The date of the current month to report on (yyyy-mm)
CURRENT_MONTH = "2026-03"
CURRENT_MONTH = "2026-04"
# The name of the folder in which to save the report
PARENT_FOLDER_NAME = "March 2026"
PARENT_FOLDER_NAME = "April 2026"

# The name of the spreadsheet with the report
SHEET_NAME = "HCA Explorer"
Expand Down
3 changes: 2 additions & 1 deletion analytics/hca-explorer-sheets/generate_static_site.py
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@

import analytics.api as ga
from analytics.static_site import generate_site, fetch_entity_title_map, enrich_detail_records
from constants import CURRENT_MONTH, HCA_ID, SECRET_NAME, ANALYTICS_START, OAUTH_PORT
from constants import CURRENT_MONTH, HCA_ID, SECRET_NAME, ANALYTICS_START, OAUTH_PORT, HCA_BROWSER_ONLY_FILTER

AZUL_PROJECTS_URL = "https://service.azul.data.humancellatlas.org/index/projects"

Expand Down Expand Up @@ -94,4 +94,5 @@ def resolve_project_titles(data):
},
],
title_resolver=resolve_project_titles,
base_dimension_filter=HCA_BROWSER_ONLY_FILTER,
)
Copy link
Copy Markdown
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Added HCA_BROWSER_ONLY_FILTER (filters by hostName == explore.data.humancellatlas.org) to exclude HCA Data Portal events from the HCA Data Explorer dashboard. This filter was already defined in constants.py and used by the sheets report, but was not being passed to the static site generator.

4 changes: 2 additions & 2 deletions analytics/lungmap-analytics/sheets/constants.py
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
# CHANGE THESE VALUES TO GENERATE NEW REPORTS
# The date of the current month to report on (yyyy-mm)
CURRENT_MONTH = "2026-03"
CURRENT_MONTH = "2026-04"
# The name of the folder in which to save the report
PARENT_FOLDER_NAME = "March 2026"
PARENT_FOLDER_NAME = "April 2026"

# The name of the spreadsheet with the report
SHEET_NAME = "Lungmap Data Browser"
Expand Down
126 changes: 48 additions & 78 deletions gh-pages/anvil-explorer/data/access_requests.json
Original file line number Diff line number Diff line change
@@ -1,128 +1,98 @@
[
{
"page_path": "/datasets/b9ff5c04-4dd0-4764-b189-e9cfe49b3063",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000424",
"count": 8,
"dataset_title": "ANVIL_GTEx_v11_hg38"
},
{
"page_path": "/datasets/db7caf73-bb61-4f40-bbf1-fa1489f71068",
"click_url": "https://duos.org/dataset/DUOS-000461",
"count": 6,
"dataset_title": "ANVIL_NIMH_Broad_ConvNeuro_McCarroll_Nehme_Levy_CIRM_DS_Village"
"page_path": "/datasets/329c1f46-c814-4c2d-b4b1-c01b724f76e1",
"click_url": "https://duos.org/dataset/DUOS-000483",
"count": 4,
"dataset_title": "ANVIL_ALSCompute_Collection_GRU"
},
{
"page_path": "/datasets/b9ff5c04-4dd0-4764-b189-e9cfe49b3063",
"click_url": "https://duos.org/dataset/DUOS-000780",
"count": 5,
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000424",
"count": 4,
"dataset_title": "ANVIL_GTEx_v11_hg38"
},
{
"page_path": "/datasets/621f76fb-6bfd-4416-94e5-cfdfdaec5e07",
"click_url": "https://duos.org/dataset/DUOS-000374",
"count": 5,
"dataset_title": "ANVIL_NIMH_Broad_WGSPD1_McCarroll_COGS_DS_WGS"
},
{
"page_path": "/datasets/094f3cac-3475-464f-8cea-eb9c09577848",
"click_url": "https://duos.org/dataset/DUOS-000484",
"count": 3,
"dataset_title": "ANVIL_ALSCompute_Collection_HMB"
},
{
"page_path": "/datasets/4f70fe5e-eea9-4ad8-bade-d1912f207c47",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003047",
"count": 3,
"dataset_title": "4f70fe5e-eea9-4ad8-bade-d1912f207c47"
"page_path": "/datasets/329c1f46-c814-4c2d-b4b1-c01b724f76e1",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003184",
"count": 2,
"dataset_title": "ANVIL_ALSCompute_Collection_GRU"
},
{
"page_path": "/datasets/d976c0b2-712f-4c0b-a0cf-cd26bbdbc8a0",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs001585",
"page_path": "/datasets/56ca3afc-e1cd-441b-85f8-3fe0deb57ad6",
"click_url": "https://duos.org/dataset/DUOS-000663",
"count": 2,
"dataset_title": "ANVIL_ALS_FTD_ALS_AssociatedGenes_GRU_v1"
"dataset_title": "AnVIL_CMH_GAFK_R5"
},
{
"page_path": "/datasets/bbbcd305-77cc-4c88-94bc-55235c3da93d",
"click_url": "https://duos.org/dataset/DUOS-000284",
"page_path": "/datasets/5aacd1a5-8963-4489-8352-9e425e92e5df",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000424",
"count": 2,
"dataset_title": "ANVIL_ccdg_asc_ndd_daly_talkowski_pericak_vance_asd_wgs"
"dataset_title": "ANVIL_GTEx_v10_hg38"
},
{
"page_path": "/datasets/fdf85a48-027b-49fd-999c-41e01ceffac5",
"click_url": "https://duos.org/dataset/DUOS-000252",
"count": 1,
"dataset_title": "ANVIL_NIMH_Broad_WGSPD1_McCarroll_Pato_GRU_WGS"
"page_path": "/datasets/d4079d07-421c-4233-afe3-f17c8f11503a",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003047",
"count": 2,
"dataset_title": "ANVIL_GREGoR_R01_HMB"
},
{
"page_path": "/datasets/d976c0b2-712f-4c0b-a0cf-cd26bbdbc8a0",
"click_url": "https://duos.org/dataset/DUOS-000239",
"page_path": "/datasets/3db7b5ed-6593-4c02-8ccb-270b6a1a44c7",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003537",
"count": 1,
"dataset_title": "ANVIL_ALS_FTD_ALS_AssociatedGenes_GRU_v1"
"dataset_title": "ANVIL_HudsonAlpha_LR_v1_GRU"
},
{
"page_path": "/datasets/bc42104a-03f0-4143-9b24-4394d1140a1b",
"click_url": "https://duos.org/dataset/DUOS-000306",
"page_path": "/datasets/4f70fe5e-eea9-4ad8-bade-d1912f207c47",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003047",
"count": 1,
"dataset_title": "ANVIL_CCDG_NYGC_NP_Autism_SSC_WGS"
"dataset_title": "4f70fe5e-eea9-4ad8-bade-d1912f207c47"
},
{
"page_path": "/datasets/bbe9be84-065c-4a44-8d47-e0543de1dd77",
"click_url": "https://duos.org/dataset/DUOS-000375",
"page_path": "/datasets/591f7dd1-9b6b-4f40-a753-e20e005d2b32",
"click_url": "https://duos.org/dataset/DUOS-000379",
"count": 1,
"dataset_title": "ANVIL_NIMH_Broad_WGSPD1_McCarroll_Escamilla_DS_WGS"
"dataset_title": "ANVIL_CMG_YALE_DS_MC"
},
{
"page_path": "/datasets/8c5cce68-7d79-43b0-9004-a66c02f6ee5f",
"click_url": "https://duos.org/dataset/DUOS-000377",
"page_path": "/datasets/6ea221e5-0f83-4b5f-ad8b-49a5dbdba837",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003444",
"count": 1,
"dataset_title": "ANVIL_NIMH_Broad_WGSPD_1_McCarroll_Braff_DS_WGS"
"dataset_title": "ANVIL_DepMap_HMB"
},
{
"page_path": "/datasets/19e6aef1-bf95-40c8-92ff-7d06001864a8",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs002032",
"page_path": "/datasets/6ea221e5-0f83-4b5f-ad8b-49a5dbdba837",
"click_url": "https://duos.org/dataset/DUOS-000482",
"count": 1,
"dataset_title": "ANVIL_NIMH_CIRM_FCDI_ConvergentNeuro_McCarroll_Eggan_GRU_Arrays"
"dataset_title": "ANVIL_DepMap_HMB"
},
{
"page_path": "/datasets/7361d67c-829d-49e9-8e59-c3c55bf554f3",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000424",
"click_url": "https://duos.org/dataset/DUOS-000238",
"count": 1,
"dataset_title": "ANVIL_GTEx_V9_hg38"
},
{
"page_path": "/datasets/621f76fb-6bfd-4416-94e5-cfdfdaec5e07",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs002041",
"count": 1,
"dataset_title": "ANVIL_NIMH_Broad_WGSPD1_McCarroll_COGS_DS_WGS"
},
{
"page_path": "/datasets/5047fc67-a80a-4a83-8cc3-515ec15df0fa",
"click_url": "https://duos.org/dataset/DUOS-000376",
"count": 1,
"dataset_title": "ANVIL_NIMH_Broad_WGSPD1_McCarroll_Light_DS_WGS"
},
{
"page_path": "/datasets/4f70fe5e-eea9-4ad8-bade-d1912f207c47",
"click_url": "https://duos.org/dataset/DUOS-000752",
"page_path": "/datasets/a00842c8-12f8-4f92-a7b3-01bb73ffd4e4",
"click_url": "https://duos.org/dataset/DUOS-000744",
"count": 1,
"dataset_title": "4f70fe5e-eea9-4ad8-bade-d1912f207c47"
"dataset_title": "AnVIL_NIA_CARD_LR_WGS_NABEC_GRU_V2"
},
{
"page_path": "/datasets/336b8487-36c8-407e-b862-41f05709e789",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000693",
"page_path": "/datasets/b9ff5c04-4dd0-4764-b189-e9cfe49b3063",
"click_url": "https://duos.org/dataset/DUOS-000780",
"count": 1,
"dataset_title": "ANVIL_CMG_UWASH_HMB"
"dataset_title": "ANVIL_GTEx_v11_hg38"
},
{
"page_path": "/datasets/329c1f46-c814-4c2d-b4b1-c01b724f76e1",
"click_url": "https://duos.org/dataset/DUOS-000483",
"page_path": "/datasets/c7822863-e4e1-4f6f-ba9d-c4766436c4e5",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003047",
"count": 1,
"dataset_title": "ANVIL_ALSCompute_Collection_GRU"
"dataset_title": "c7822863-e4e1-4f6f-ba9d-c4766436c4e5"
},
{
"page_path": "/datasets/fe7091a5-0784-471a-8e12-84aa686215db",
"click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000424",
"page_path": "/datasets/d4079d07-421c-4233-afe3-f17c8f11503a",
"click_url": "https://duos.org/dataset/DUOS-000370",
"count": 1,
"dataset_title": "ANVIL_GTEx_V8_hg38"
"dataset_title": "ANVIL_GREGoR_R01_HMB"
}
]
42 changes: 21 additions & 21 deletions gh-pages/anvil-explorer/data/custom_events.json
Original file line number Diff line number Diff line change
Expand Up @@ -2,50 +2,50 @@
{
"event_name": "filter_selected",
"label": "Filter Selections",
"current": 538,
"prior": 251,
"change": 1.1434262948207172
"current": 488,
"prior": 538,
"change": -0.09293680297397769
},
{
"event_name": "index_bulk_download_requested",
"label": "Cohort curl Download Requests",
"current": 4,
"prior": 0,
"change": null
"current": 11,
"prior": 4,
"change": 1.75
},
{
"event_name": "index_file_manifest_requested",
"label": "Cohort File Manifest Requests",
"current": 9,
"prior": 0,
"change": null
"current": 2,
"prior": 9,
"change": -0.7777777777777778
},
{
"event_name": "index_analyze_in_terra_requested",
"label": "Cohort Analyze in Terra Requests",
"current": 7,
"prior": 0,
"change": null
"current": 2,
"prior": 7,
"change": -0.7142857142857143
},
{
"event_name": "dataset_analyze_in_terra_requested",
"label": "Dataset Analyze in Terra Requests",
"current": 1,
"prior": 0,
"change": null
"current": 6,
"prior": 1,
"change": 5.0
},
{
"event_name": "dataset_bulk_download_requested",
"label": "Dataset curl Download Requests",
"current": 5,
"prior": 0,
"change": null
"current": 6,
"prior": 5,
"change": 0.2
},
{
"event_name": "dataset_file_manifest_requested",
"label": "Dataset File Manifest Requests",
"current": 2,
"prior": 0,
"change": null
"current": 6,
"prior": 2,
"change": 2.0
}
]
Original file line number Diff line number Diff line change
@@ -1,8 +1,20 @@
[
{
"page_path": "/datasets/303b5a92-57c8-4df2-8331-8ff308f21293/export/export-to-terra",
"page_path": "/datasets/e5aee011-bdb3-4caa-954c-a46678656270/export/export-to-terra",
"entity_name": "(not set)",
"count": 3,
"dataset_title": "ANVIL_GTEx_public_data"
},
{
"page_path": "/datasets/b9ff5c04-4dd0-4764-b189-e9cfe49b3063/export/export-to-terra",
"entity_name": "(not set)",
"count": 2,
"dataset_title": "ANVIL_GTEx_v11_hg38"
},
{
"page_path": "/datasets/fe7091a5-0784-471a-8e12-84aa686215db/export/export-to-terra",
"entity_name": "(not set)",
"count": 1,
"dataset_title": "ANVIL_1000G_PRIMED_data_model"
"dataset_title": "ANVIL_GTEx_V8_hg38"
}
]
Original file line number Diff line number Diff line change
Expand Up @@ -4,5 +4,11 @@
"entity_name": "(not set)",
"count": 5,
"dataset_title": "ANVIL_1000G_PRIMED_data_model"
},
{
"page_path": "/datasets/63d97e58-a825-4b93-a9a7-0d9d165dc826/export/get-curl-command",
"entity_name": "datasets",
"count": 1,
"dataset_title": "ANVIL_1000G_high_coverage_2019"
}
]
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,13 @@
{
"page_path": "/datasets/303b5a92-57c8-4df2-8331-8ff308f21293/export/download-manifest",
"entity_name": "(not set)",
"count": 2,
"count": 4,
"dataset_title": "ANVIL_1000G_PRIMED_data_model"
},
{
"page_path": "/datasets/b9ff5c04-4dd0-4764-b189-e9cfe49b3063/export/download-manifest",
"entity_name": "(not set)",
"count": 2,
"dataset_title": "ANVIL_GTEx_v11_hg38"
}
]
4 changes: 2 additions & 2 deletions gh-pages/anvil-explorer/data/file_download_events.json
Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@
"total": 1,
"files": [
{
"file_name": "/sites/default/files/CCDG_CVD_EOAF_FINAL_w_link.pdf",
"link_url": "https://ccdg.rutgers.edu/sites/default/files/CCDG_CVD_EOAF_FINAL_w_link.pdf",
"file_name": "/vol1/ftp/data_collections/1000G_2504_high_cov/NYGC_b38_pipeline_description.pdf",
"link_url": "http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000G_2504_high_cov/NYGC_b38_pipeline_des",
"count": 1
}
]
Expand Down
14 changes: 7 additions & 7 deletions gh-pages/anvil-explorer/data/file_downloads.json
Original file line number Diff line number Diff line change
@@ -1,14 +1,14 @@
[
{
"entity_name": "1kgp.chr1.recalibrated.snp_indel.pass.EUR.bcftools.stats.txt",
"dataset_id": "1c39e90e-463c-9853-793e-7e4c8f081815",
"related_entity_name": "ANVIL_T2T",
"count": 2
"entity_name": "MBNL1-BGRSDLV03-28dox_S24_L001_R1_001.filtered.trimmed.paired.fastq.gz",
"dataset_id": "1d9283db-632e-8cc7-07e1-f485727dbf23",
"related_entity_name": "AnVIL_ENCORE_RS293",
"count": 1
},
{
"entity_name": "README",
"dataset_id": "59960255-cca9-fcd3-d8ca-eb88f2c72f00",
"related_entity_name": "ANVIL_HPRC",
"entity_name": "SMNDC1-BG293LV06-91B_quant.sf",
"dataset_id": "a19e4cba-3171-e413-4c1b-73ad7328d236",
"related_entity_name": "AnVIL_ENCORE_293T",
"count": 1
}
]
Loading
Loading