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ValerioGiuffrida
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| # 0) (Optional) quick descriptive check of subgroup distributions | ||
| # ------------------------------------------------------------ | ||
| fcsn_stats_before <- df %>% | ||
| summarise(across(all_of(fcsn_vars), | ||
| list(min = ~min(as.numeric(.x), na.rm = TRUE), | ||
| max = ~max(as.numeric(.x), na.rm = TRUE), | ||
| mean = ~mean(as.numeric(.x), na.rm = TRUE)))) | ||
| fcsn_stats_before |
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See point on data quality.
To be reviewed.
#240
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| # ------------------------------------------------------------ | ||
| # 3) Flags: subgroup exceeds main group | ||
| # ------------------------------------------------------------ | ||
| df <- df %>% | ||
| mutate( | ||
| FCSN_flag_protein = ifelse( | ||
| !is.na(FCSPr) & ( | ||
| ( !is.na(FCSNPrMeatF) & FCSNPrMeatF > FCSPr ) | | ||
| ( !is.na(FCSNPrMeatO) & FCSNPrMeatO > FCSPr ) | | ||
| ( !is.na(FCSNPrFish) & FCSNPrFish > FCSPr ) | | ||
| ( !is.na(FCSNPrEggs) & FCSNPrEggs > FCSPr ) | ||
| ), | ||
| 1L, 0L | ||
| ), | ||
| FCSN_flag_veg = ifelse( | ||
| !is.na(FCSVeg) & ( | ||
| ( !is.na(FCSNVegOrg) & FCSNVegOrg > FCSVeg ) | | ||
| ( !is.na(FCSNVegGre) & FCSNVegGre > FCSVeg ) | ||
| ), | ||
| 1L, 0L | ||
| ), | ||
| FCSN_flag_fruit = ifelse( | ||
| !is.na(FCSFruit) & !is.na(FCSNFruiOrg) & (FCSNFruiOrg > FCSFruit), | ||
| 1L, 0L | ||
| ) | ||
| ) | ||
|
|
||
| # Flag distributions | ||
| table(df$FCSN_flag_protein, useNA = "ifany") | ||
| table(df$FCSN_flag_veg, useNA = "ifany") | ||
| table(df$FCSN_flag_fruit, useNA = "ifany") |
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Part of logical cleaning and outlier detection
#240
ValerioGiuffrida
approved these changes
Feb 27, 2026
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