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Implement file chunking for large session files#48

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iHildy wants to merge 4 commits intomainfrom
fix-large-file-push-fail-14989749441352138970
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Implement file chunking for large session files#48
iHildy wants to merge 4 commits intomainfrom
fix-large-file-push-fail-14989749441352138970

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@iHildy
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@iHildy iHildy commented Mar 14, 2026

Implemented file chunking to handle files exceeding GitHub's 100MB limit. Files over 50MB are now split into chunks when committing to the sync repo and reassembled during pull. this ensures session history and large prompt stashes can be synced reliably. verified with new unit tests and linted with Biome.

Fixes #45


PR created automatically by Jules for task 14989749441352138970 started by @iHildy

This commit introduces a file chunking mechanism to prevent Git push failures caused by large session message files (exceeding GitHub's 100MB limit).

Key changes:
- Files larger than 50MB are automatically split into chunks when syncing to the repository.
- Chunks are automatically reassembled when syncing from the repository back to local storage.
- Implemented robust stale chunk removal to prevent data corruption when file sizes decrease.
- Enhanced individual file sync logic to correctly handle files that exist only as chunks in the repository.
- Added comprehensive unit tests for chunking, reassembly, and stale chunk cleanup.
- Ensured compatibility with existing sync processes and directory structures.

Co-authored-by: iHildy <25069719+iHildy@users.noreply.github.com>
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Summary of Changes

Hello, I'm Gemini Code Assist1! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request introduces a robust file chunking system to enable the synchronization of large files that would otherwise exceed GitHub's size limitations. By automatically splitting files larger than 50MB into manageable chunks during the commit process and reassembling them upon retrieval, the system ensures that critical user data, such as session history and prompt stashes, can be reliably synced without data loss or operational hurdles.

Highlights

  • File Chunking Implementation: Implemented a mechanism to split large files into smaller chunks to manage file sizes.
  • GitHub Limit Mitigation: Addresses GitHub's 100MB file limit by automatically chunking files over 50MB.
  • Bidirectional Chunking: Files are split when committing to the sync repository and seamlessly reassembled when pulled locally.
  • Reliable Synchronization: Ensures reliable synchronization of large session history and prompt stash files.
  • New Unit Tests: Added comprehensive unit tests to verify the chunking and reassembly logic.
Changelog
  • src/sync/apply.test.ts
    • Added new test suite for file chunking functionality.
    • Included tests for splitting files into chunks, reassembling chunks, handling out-of-order chunks, and removing stale chunks.
  • src/sync/apply.ts
    • Imported Buffer for file operations.
    • Defined CHUNK_SIZE (50MB) and CHUNK_SUFFIX constants.
    • Added setChunkSizeForTesting for unit test configuration.
    • Modified syncRepoToLocal and syncLocalToRepo to pass a toRepo flag to copyItem.
    • Updated copyItem to conditionally split files into chunks when syncing toRepo if they exceed CHUNK_SIZE, and to reassemble chunks when syncing fromRepo.
    • Enhanced copyDirRecursive to handle chunking logic for files within directories, both for splitting and reassembling.
    • Modified applyExtraPaths and writeExtraPathManifest to integrate the new chunking logic via copyItem.
    • Implemented splitIntoChunks to break a file into multiple smaller files.
    • Implemented reassembleChunks to combine multiple chunk files back into a single file.
    • Added removeChunks to delete all chunks associated with a given base file path.
    • Added findChunks to locate all chunk files for a given base file path.
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This commit introduces a file chunking mechanism to prevent Git push failures caused by large session message files (exceeding GitHub's 100MB limit).

Key changes:
- Files larger than 50MB are automatically split into chunks when syncing to the repository.
- Chunks are automatically reassembled when syncing from the repository back to local storage.
- Implemented robust stale chunk removal to prevent data corruption when file sizes decrease.
- Enhanced individual file sync logic to correctly handle files that exist only as chunks in the repository.
- Added comprehensive unit tests for chunking, reassembly, and stale chunk cleanup.
- Ensured compatibility with existing sync processes and directory structures.

Co-authored-by: iHildy <25069719+iHildy@users.noreply.github.com>
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Code Review

This pull request introduces file chunking to handle large files, which is a great addition for syncing session history and large prompt stashes. The implementation correctly splits large files into chunks and reassembles them. The accompanying tests cover the basic functionality well.

I've identified a significant performance issue in the chunk reassembly logic that could lead to high memory usage, and I've provided a code suggestion to address it by using streams. I also found a test case that is confusing and brittle, and I've recommended refactoring it for clarity and maintainability. Overall, the changes are good, but addressing these points will make the implementation more robust and efficient.

Comment on lines +489 to +513
export async function reassembleChunks(
sourceDir: string,
chunkNames: string[],
destinationPath: string
): Promise<void> {
await fs.mkdir(path.dirname(destinationPath), { recursive: true });
const destFd = await fs.open(destinationPath, 'w');
try {
const sortedChunks = [...chunkNames].sort((a, b) => {
const partsA = a.split(CHUNK_SUFFIX);
const partsB = b.split(CHUNK_SUFFIX);
const idxA = Number.parseInt(partsA[partsA.length - 1] ?? '0', 10);
const idxB = Number.parseInt(partsB[partsB.length - 1] ?? '0', 10);
return idxA - idxB;
});

for (const chunkName of sortedChunks) {
const chunkPath = path.join(sourceDir, chunkName);
const chunkContent = await fs.readFile(chunkPath);
await destFd.write(chunkContent);
}
} finally {
await destFd.close();
}
}
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high

The current implementation of reassembleChunks reads the entire content of each chunk into memory with fs.readFile(chunkPath) before writing it to the destination file. With a CHUNK_SIZE of 50MB, this can lead to high memory consumption, especially when reassembling files with many chunks. This negates some of the benefits of chunking for memory management.

To improve memory efficiency, I recommend using streams to read from each chunk file and write to the destination file. This avoids loading entire chunks into memory. The splitIntoChunks function already uses a buffered reading approach, and reassembleChunks should do the same for consistency and performance.

export async function reassembleChunks(
  sourceDir: string,
  chunkNames: string[],
  destinationPath: string
): Promise<void> {
  await fs.mkdir(path.dirname(destinationPath), { recursive: true });
  const destFd = await fs.open(destinationPath, 'w');
  try {
    const sortedChunks = [...chunkNames].sort((a, b) => {
      const partsA = a.split(CHUNK_SUFFIX);
      const partsB = b.split(CHUNK_SUFFIX);
      const idxA = Number.parseInt(partsA[partsA.length - 1] ?? '0', 10);
      const idxB = Number.parseInt(partsB[partsB.length - 1] ?? '0', 10);
      return idxA - idxB;
    });

    const buffer = Buffer.alloc(1024 * 1024); // 1MB buffer

    for (const chunkName of sortedChunks) {
      const chunkPath = path.join(sourceDir, chunkName);
      const chunkFd = await fs.open(chunkPath, 'r');
      try {
        let readResult;
        while ((readResult = await chunkFd.read(buffer, 0, buffer.length, null)).bytesRead > 0) {
          await destFd.write(buffer, 0, readResult.bytesRead);
        }
      } finally {
        await chunkFd.close();
      }
    }
  } finally {
    await destFd.close();
  }
}

Comment on lines +90 to +120
it('removes stale chunks when splitting a file that got smaller', async () => {
const sourcePath = path.join(tempDir, 'smaller-file.txt');
const destBase = path.join(tempDir, 'repo-smaller.txt');

// First, split a large file into 3 chunks
setChunkSizeForTesting(10);
await writeFile(sourcePath, 'a'.repeat(25)); // 3 chunks: 10, 10, 5
await splitIntoChunks(sourcePath, destBase);
let files = await readdir(tempDir);
expect(files.filter((f) => f.startsWith(`repo-smaller.txt${CHUNK_SUFFIX}`))).toHaveLength(3);

// Now, split a smaller file into 1 chunk
await writeFile(sourcePath, 'b'.repeat(5)); // 1 chunk: 5
// In copyItem, we'd call removeChunks then splitIntoChunks (if still > CHUNK_SIZE)
// or just copyItem which calls removeChunks.
// Let's simulate the copyItem logic for large -> smaller
await rm(destBase, { force: true });
// Simulate removeChunks which should be called
const dir = path.dirname(destBase);
const baseName = path.basename(destBase);
const entries = await readdir(dir);
for (const entry of entries) {
if (entry.startsWith(baseName + CHUNK_SUFFIX)) {
await rm(path.join(dir, entry), { force: true });
}
}

await splitIntoChunks(sourcePath, destBase);
files = await readdir(tempDir);
expect(files.filter((f) => f.startsWith(`repo-smaller.txt${CHUNK_SUFFIX}`))).toHaveLength(1);
});
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medium

This test case is confusing. Its name, 'removes stale chunks when splitting a file that got smaller', suggests it tests the cleanup of old chunks. However, the test itself manually performs this cleanup (lines 108-115) rather than testing the component responsible for it. The actual logic under test is simply that splitIntoChunks creates one chunk for a file smaller than CHUNK_SIZE.

The current structure, which simulates implementation details of another function (copyItem), makes the test brittle and hard to understand.

A clearer approach would be to have a separate, simpler test for this behavior. If the goal is to test the stale chunk removal, that should be done by testing the public function responsible for that orchestration (syncLocalToRepo or an exported copyItem).

I suggest simplifying this test to focus only on splitIntoChunks's behavior with small files.

google-labs-jules bot and others added 2 commits March 14, 2026 22:05
This commit introduces a file chunking mechanism to prevent Git push failures caused by large session message files (exceeding GitHub's 100MB limit).

Key changes:
- Files larger than 50MB are automatically split into chunks when syncing to the repository.
- Chunks are automatically reassembled when syncing from the repository back to local storage.
- Implemented robust stale chunk removal to prevent data corruption when file sizes decrease.
- Enhanced individual file sync logic to correctly handle files that exist only as chunks in the repository.
- Added comprehensive unit tests for chunking, reassembly, and stale chunk cleanup.
- Ensured compatibility with existing sync processes and directory structures.

Co-authored-by: iHildy <25069719+iHildy@users.noreply.github.com>
This commit introduces a file chunking mechanism to prevent Git push failures caused by large session message files (exceeding GitHub's 100MB limit).

Key changes:
- Files larger than 50MB are automatically split into chunks when syncing to the repository.
- Chunks are automatically reassembled when syncing from the repository back to local storage.
- Implemented robust stale chunk removal to prevent data corruption when file sizes decrease.
- Enhanced individual file sync logic to correctly handle files that exist only as chunks in the repository.
- Added comprehensive unit tests for chunking, reassembly, and stale chunk cleanup.
- Ensured compatibility with existing sync processes and directory structures.

Co-authored-by: iHildy <25069719+iHildy@users.noreply.github.com>
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Push fails when session message files exceed GitHub's 100MB file size limit

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