This repository contains ticket-based work for CDM (Collaborative Data Management) science projects. Each parent ticket folder contains subtasks organized as subfolders.
Each ticket or task assigned gets its own folder at the root level:
- Folder name format:
CDMSCI-{ticket-number}-{short-description} - Each folder contains all code, data, notebooks, and documentation for that specific task
- Subtasks are organized as subfolders within parent ticket folders
In This Repository:
- Ticket folders with analysis code
- Jupyter notebooks for data processing
- Python scripts
- Small result files (CSV, JSON, PNG < 100MB)
- Documentation and READMEs
Local Only (Gitignored):
- Large databases (> 100MB)
- Downloaded organism data
- Shared resources and reference materials
- Large model files (SBML > 100MB)
- Clone this repository:
git clone git@github.com:kbaseincubator/CDM_Tasks_jplfaria.git
cd CDM_Tasks_jplfaria- Navigate to the ticket folder you want to work on:
cd CDMSCI-193-rbtnseq-modeling- Follow the instructions in that ticket's README
José Pedro Faria Email: jplfaria@anl.gov
This work is part of the DOE Systems Biology Knowledgebase (KBase) project.