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@NeotomaDB The Neotoma Paleoecology Database Collective

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    69 repositories

    • Current_Workshop

      Public
      Current Workshops for Neotoma
      HTML
      •
      MIT License
      •2•3•1•0•Updated Apr 16, 2026Apr 16, 2026

    • tilia_api

      Public
      A repository for the implementation of the Tilia/uploader API
      JavaScript
      •
      MIT License
      •1•0•9•6•Updated Apr 13, 2026Apr 13, 2026

    • neotoma2

      Public
      Repository for the updated neotoma R package.
      rrstatsneotoma
      rrstatsneotomansfpaleoecologyearthcube
      R
      •
      Other
      •12•9•6•1•Updated Apr 13, 2026Apr 13, 2026

    • Workshops

      Public
      This repository is a location for storing and developing workshops materials.
      HTML
      •
      MIT License
      •4•2•3•1•Updated Apr 10, 2026Apr 10, 2026

    • neotoma2faire

      Public
      A repository to convert Neotoma project and dataset data to FAIRe standards.
      Python
      •
      Other
      •0•0•0•0•Updated Mar 14, 2026Mar 14, 2026

    • DataBUS

      Public
      The Neotoma Paleoecology Database Data Bulk Uploader System
      Python
      •
      MIT License
      •3•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • api_dockers

      Public
      A repository for docker containers that can be used to run a local version of the Neotoma infrastructure.
      Shell
      •
      MIT License
      •0•1•0•0•Updated Mar 11, 2026Mar 11, 2026

    • Neotoma_SQL

      Public
      Repository for functions associated with Neotoma's Postgres DB
      postgressqlneotoma
      postgressqlneotomapaleoecology
      Python
      •
      MIT License
      •0•1•3•1•Updated Feb 25, 2026Feb 25, 2026

    • neotomapydoi

      Public
      A repository for managing Neotoma DataCite DOIs using Python.
      Python
      •
      MIT License
      •0•1•0•0•Updated Feb 25, 2026Feb 25, 2026

    • clean_backup

      Public
      A repository to generate automated backups for the Neotoma PostgreSQL database using AWS infrastructure
      bashdockerfilepostgresql
      bashdockerfilepostgresqlaws-cliaws-ecrneotomansfaws-batchpaleoecologyneotoma-database
      Shell
      •
      MIT License
      •0•1•1•0•Updated Feb 24, 2026Feb 24, 2026

    • neotomadb.github.io

      Public
      Neotoma website on github.
      HTML
      •
      MIT License
      •0•1•1•0•Updated Feb 20, 2026Feb 20, 2026

    • DataBUS_Ostracode

      Public archive
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 17, 2026Feb 17, 2026

    • neotoma_database_functions

      Public
      A repository for managing database functions for the Neotoma Database.
      PLpgSQL
      •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

    • periodic_updates

      Public
      A project to help support the periodic update and revision of data within Neotoma that comes from external sources.
      Python
      •0•0•0•0•Updated Feb 10, 2026Feb 10, 2026

    • api_nodetest

      Public
      node.js and express implementation for the Neotoma API
      nodejsapiexpress
      nodejsapiexpressswaggerneotomapaleoecologyneotoma-databaseneotoma-api
      JavaScript
      •
      MIT License
      •1•2•33•0•Updated Jan 27, 2026Jan 27, 2026

    • ndbLandingPage

      Public
      A repository for DOI landing pages using Vue.js as the front-end.
      vuejsdoineotoma
      vuejsdoineotoma
      Vue
      •
      MIT License
      •3•1•1•1•Updated Jan 27, 2026Jan 27, 2026

    • DataBUS_SISAL

      Public archive
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

    • system_documentation

      Public
      A repository to manage Neotoma's complete system documentation.
      Python
      •0•1•0•0•Updated Jan 15, 2026Jan 15, 2026

    • DataBUS_Pb210

      Public archive
      Lead210 DataBUS push.
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • landingpagev3

      Public
      A repository for the updated (Vue3) Neotoma Landing Pages
      CSS
      •
      MIT License
      •0•0•1•4•Updated Dec 1, 2025Dec 1, 2025

    • Workshops_Sisal

      Public
      HTML
      •
      MIT License
      •1•0•0•0•Updated Nov 26, 2025Nov 26, 2025

    • ndbduplicates

      Public
      A small script and package to manage checking and fixing duplicate records in the Neotoma Database.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • landingPages

      Public
      A repository specifically for generating RMarkdown landing pages for Neotoma Datasets
      metadatardatabase
      metadatardatabaselanding-pagermarkdownschema-orgneotoma-database
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • Explorer

      Public
      Neotoma Explorer - issue tracker and code repository
      JavaScript
      •
      MIT License
      •0•2•22•0•Updated Jul 28, 2025Jul 28, 2025

    • repo_best_practices

      Public
      A repo that describes the recommended practices for setting up new repositories within the Neotoma Paleoecology Database.
      best-practicesneotomadb
      best-practicesneotomadb
      MIT License
      •0•0•1•0•Updated May 22, 2025May 22, 2025

    • taxoninsertion

      Public
      A package to bulk upload taxonomic data (beetles in this case) from Family/genus/species info.
      Python
      •
      MIT License
      •0•0•0•0•Updated May 21, 2025May 21, 2025

    • NeotomaSummary

      Public
      A repository to generate an overal summary of the Neotoma DB from a set of SQL and API calls.
      sqlrmarkdownneotoma-database
      sqlrmarkdownneotoma-database
      HTML
      •
      Other
      •1•0•0•0•Updated May 15, 2025May 15, 2025

    • neotoma_doi

      Public archive
      Managing DOIs with a postgres database and the DataCite API.
      R
      •
      MIT License
      •0•1•5•0•Updated May 12, 2025May 12, 2025

    • R-workshop

      Public
      Developed R-workshop with webr-r and Quarto documents. Maintaining the binder at CurrentWorkshop for now.
      Python
      •
      MIT License
      •0•0•0•0•Updated May 9, 2025May 9, 2025

    • StateofDB_DockerCompose

      Public
      Building the State of the DB from 2 Docker containers: one for Postgres, one for RStudio
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Apr 25, 2025Apr 25, 2025
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