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dev branch to collect all changes for Poseidon v3.0.0 #91

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689f0fb
started to update the version table
nevrome Mar 16, 2026
ffcbe9d
started the rewriting of the long-form .janno documentation
nevrome Mar 16, 2026
d6eb5fb
continued the work on rewriting what's necessary in the .janno docume…
nevrome Mar 17, 2026
ef6e922
more
nevrome Mar 17, 2026
157907b
documented more new columns
nevrome Mar 17, 2026
977f26f
and more
nevrome Mar 17, 2026
1c2f98c
more
nevrome Mar 17, 2026
78c3257
more
nevrome Mar 17, 2026
db63570
update of acknowledgements
nevrome Mar 17, 2026
83b7eb5
finally removed obsolete archive explorer code
nevrome Mar 17, 2026
a64992d
superficial changes to the .ssf documentation
nevrome Mar 17, 2026
5e2164d
adjustments to the genotype data documentation
nevrome Mar 17, 2026
bbb6466
introduced GIT_LFS_SKIP_SMUDGE=1 as an option now for the package sub…
nevrome Mar 17, 2026
e969aab
more minor changes on different pages
nevrome Mar 17, 2026
407fb29
updated trident docs
stschiff Mar 17, 2026
4283e4a
Update genotype_data.md
nevrome Mar 18, 2026
7ace539
Merge pull request #93 from poseidon-framework/genoChangesPoseidonv300
nevrome Mar 18, 2026
1a755ce
Update janno_details.md
nevrome Mar 18, 2026
d03197a
Update janno_details.md
nevrome Mar 18, 2026
0c956a0
Update janno_details.md
nevrome Mar 18, 2026
36e57f0
Merge pull request #92 from poseidon-framework/jannoChangesPoseidonv300
nevrome Mar 18, 2026
4920aae
removed .DS_Store file and added to gitignore
stschiff Mar 18, 2026
1118f21
added more information for jannocoalesce
stschiff Mar 18, 2026
36353a6
Merge pull request #94 from poseidon-framework/trident_v3_changes
stschiff Mar 18, 2026
85438ca
tidying up some recent changes
nevrome Mar 19, 2026
d309843
warning about the version-specific behaviour of the janno R package
nevrome Mar 19, 2026
86f8112
introduced a mechanism to document imperfect support in the version t…
nevrome Mar 19, 2026
bf9dcd7
completed update of version table
nevrome Mar 19, 2026
704693d
realized that we will have a trident V 1.7.0.0 release before we jump…
nevrome Mar 20, 2026
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -2,3 +2,4 @@ _site/
.jekyll-cache/
.Rhistory
node_modules/
.DS_Store
1 change: 1 addition & 0 deletions acknowledgements.md
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Expand Up @@ -2,6 +2,7 @@

Poseidon depends on a large community of contributors and advisors. Here we list project alumni and other contributors.

- **Luca Thale-Bombien**: Student assistant for the Poseidon project in 2024 and 2025.
- **Dhananjaya Bandara Aththanayaka Aththanayaka Mudiyanselage**: Student assistant for the Poseidon project from 2021 to 2025.
- **Kenana Saeed**: Student assistant for the Poseidon project in 2024.
- **Michelle O´Reilly**: Design of the Poseidon logo and colour palette.
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