Keep job logs out of outer snakemake log and move code out of Snakefile#65
Merged
jeremyestein merged 3 commits intodevfrom Feb 20, 2026
Merged
Keep job logs out of outer snakemake log and move code out of Snakefile#65jeremyestein merged 3 commits intodevfrom
jeremyestein merged 3 commits intodevfrom
Conversation
jeremyestein
force-pushed
the
jeremy/docs
branch
from
769609a to
e7f780c
Compare
jeremyestein
force-pushed
the
jeremy/log-tidy
branch
from
2c957dc to
c8928d1
Compare
jeremyestein
had a problem deploying
to
hasher
GitHub Actions
Failure
jeremyestein
force-pushed
the
jeremy/docs
branch
from
4a9cc24 to
7c584af
Compare
jeremyestein
force-pushed
the
jeremy/log-tidy
branch
from
c8928d1 to
bf628e4
Compare
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Some per-job logging was going into the main snakemake log. Fix that and tidy the paths of the log files.
Also refactor Snakefile so it calls out to utility methods rather than containing a lot of code itself.